K-Fold
Predictor of the Protein Folding Mechanism and Rate

Last Update 08/09/06


 

Experimental protein kinetic data used to train and test our
SVM-based methods


Protein
  Chain
   Residues
 Length
Exp-KO
Pred-KO
 Exp-log[kf]
 Pred-log[kf]
               
1A6N
_
all
151
Multi-State
Multi-State
0.5
1.09
1AON
_
191-345
155
Multi-State
Two-State
0.3
0.49
1APS
_
all
98
Two-State
Two-State
-0.7
1.15
1AYE
_
4A-80A
75
Two-State
Two-State
3.0
2.17
1BDD
_
1-58
58
Two-State
Two-State
5.1
3.03
1BNI
_
all
108
Multi-State
Multi-State
1.1
1.68
1BRS
F
all
89
Multi-State
Multi-State
1.5
2.08
1C8C
A
all
64
Two-State
Two-State
3.0
2.61
1C9O
_
all
66
Two-State
Two-State
3.1
2.25
1CBI
_
all
136
Multi-State
Multi-State
-1.4
0.91
1CEI
_
all
85
Multi-State
Multi-State
2.5
2.57
1CSP
_
all
67
Two-State
Two-State
2.9
2.19
1DIV
_
1-56
56
Two-State
Two-State
2.6
3.20
1EAL
_
all
127
Multi-State
Multi-State
0.6
1.25
1ENH
_
all
54
Two-State
Two-State
4.6
3.11
1FKB
_
all
107
Two-State
Two-State
0.7
0.99
1FNF
_
1326-1415
90
Two-State
Two-State
-0.4
1.18
1FNF
_
1416-1509
94
Multi-State
Two-State
2.4
1.30
1G6P
_
all
66
Two-State
Two-State
2.7
2.18
1GXT
A
all
88
Multi-State
Two-State
1.9
1.47
1HNG
B
2-96
95
Multi-State
Two-State
0.8
1.57
1HZ6
B
2-64
63
Two-State
Two-State
1.8
2.42
1IFC
_
all
131
Multi-State
Multi-State
1.5
1.05
1IMQ
_
all
86
Two-State
Multi-State
3.2
2.38
1L2Y
A
all
20
Two-State
Two-State
5.4
5.00
1L8W
B
all
294
Two-State
Multi-State
0.7
-0.67
1LMB
3
6-85
80
Two-State
Two-State
3.7
2.29
1LOP
_
all
164
Two-State
Multi-State
2.9
-0.02
1MJC
_
all
69
Two-State
Two-State
2.3
2.22
1OPA
_
all
133
Multi-State
Multi-State
0.6
1.15
1PGB
_
41-56
16
Two-State
Two-State
5.2
5.31
1PGB
_
all
56
Two-State
Two-State
2.6
2.66
1PHP
_
1-175
175
Multi-State
Multi-State
1.0
0.68
1PHP
_
176-394
219
Multi-State
Multi-State
-1.5
0.73
1PIN
A
6-39
34
Two-State
Two-State
4.1
3.82
1PNJ
_
all
86
Two-State
Two-State
-0.5
1.83
1POH
_
all
85
Two-State
Two-State
1.2
1.53
1PSF
_
all
69
Two-State
Two-State
1.4
2.18
1QOP
A
all
265
Multi-State
Multi-State
-1.1
-0.25
1QOP
B
all
390
Multi-State
Multi-State
-3.0
-0.43
1RA9
_
all
159
Multi-State
Multi-State
2.0
0.40
1RIS
_
all
97
Two-State
Two-State
2.6
1.37
1SCE
C
all
111
Multi-State
Multi-State
1.8
2.46
1SHF
_
all
59
Two-State
Two-State
2.0
2.49
1SHG
_
all
57
Two-State
Two-State
0.6
2.33
1SRL
_
all
56
Two-State
Two-State
1.7
2.60
1TEN
_
all
90
Two-State
Two-State
0.5
1.40
1TIT
_
all
89
Multi-State
Two-State
1.6
1.46
1UBQ
_
all
76
Multi-State
Two-State
2.6
2.23
1URN
_
all
96
Two-State
Two-State
2.5
1.41
1VII
_
all
36
Two-State
Two-State
5.0
4.33
1WIT
_
all
93
Two-State
Two-State
0.2
1.47
256B
_
all
106
Two-State
Multi-State
5.3
2.14
2A5E
_
all
156
Multi-State
Multi-State
1.5
1.48
2ABD
_
all
86
Two-State
Two-State
2.9
1.93
2ACY
_
all
98
Two-State
Two-State
0.4
1.15
2CI2
_
all
65
Two-State
Two-State
1.7
2.31
2CRO
_
all
65
Multi-State
Two-State
1.6
2.73
2LZM
_
all
164
Multi-State
Multi-State
1.8
1.62
2PDD
_
all
43
Two-State
Two-State
4.3
3.98
2RN2
_
all
155
Multi-State
Multi-State
0.0
0.55
2VIK
_
all
126
Two-State
Multi-State
3.0
1.35
3CHY
_
all
128
Multi-State
Multi-State
0.4
1.88

  • Protein: Protein Data Bank Code
  • Chain: Protein Chain
  • Residues: First-Last Considered Residues
  • Length: Chain Length
  • Exp-KO: Experimental Kinetic Order of Protein Folding
  • Pre-KO: Predicted Kinetic Order of Protein Folding
  • Exp-log[kf]: Decimal Logarithm of the Experimental Folding Rate
  • Pred-log[kf]: Predicted Decimal Logarithm of the Folding Rate